Data

 

Available Now

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Memorial Sloan Kettering Cancer Center

• 100x WGS DNA Whole Blood and Tumor. [Wavier Required]

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Medical Reports​

• Summary of Medical History

• UCSF Reports

• Kaiser Reports

• OSU Reports

• MSK Reports

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Imaging

• March 2021 MRI

• June 2021 MRI

• June 2021 CT 

• Photographs of wound.

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Generated by Xiaowei @ Stanford

• Alignment files for the Tumor Normal WGS data, against hg38 (.bam)

• Read depth file (.wig)

• Germline SNV file (annotated .vcf)

• Mobile element insertion (only 1 detected)

• Planned: somatic SNV list (.vcf).

• Planned: copy number variations (CNV) and structural variations (SV's)

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Generated by Egor

• Genotyping Repeats (Based on newly generated genome-wide repeat catalog.)

• VCF files

• Microsatellite instability (MSI) analysis​

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In Progress

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Personalis ImmunoID NeXT DNA and RNA-seq

• 2018 Whole Blood and Tumor;

• 2021 Whole Blood and Drainage Sample. (Note: drainage is something new and we are proposing it as surrogate for biopsy, as desmoid tumor can become very aggressive due to biopsy).

• ImmunoID NeXT covers:

  • T-cell receptor (TCR) alpha & beta repertoire

  • Neoantigen detection and neoantigen load

  • Tumor mutational burden (TMB)

  • Microsatellite instability (MSI) characterization

  • Human leukocyte antigens (HLA) typing, HLA and beta-2 microglobulin (B2M) somatic mutations, and HLA loss of heterozygosity (LOH)

  • Tumor escape and resistance mechanisms

  • Oncoviral detection

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Stanford University:

• Plasma Metabolomics;

• Plasma Proteomics;

• Plasma Cytokine Profiling.

 

Upcoming

• Familial Sequencing

• T cell and B cell sequencing

• Single cell RNA-seq

• More...